---
title: Integrations | Quilt
description: Seamlessly integrate your lab ecosystem with Quilt, enabling automatic data ingestion and synchronization across systems for enhanced collaboration and efficiency.
image: https://www.quilt.bio/hubfs/QD_LogoPurpleTransparentBg_NoCutLine.png
---

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Integrations

# Connect Your Lab Ecosystem with Quilt

Data flows from instruments to insights

Quilt works with your existing lab infrastructure to **automatically ingest data from instruments** and keep it in sync across systems, so your data no longer sits in separate silos.

[Benchling Packager](https://open.quiltdata.com/b/quilt-example/packages/examples/benchling-packager)

[Watch Demo](https://youtu.be/SUMLJ0-gl5g)

****** lab ecosystem ↔ Quilt  synced

BenchlingELN

NextflowWorkflow

GanymedeInstruments

Quilt package

versioned · governed

10:24 Benchling entry → **experiments/elisa-0412** +1 rev

10:21 Nextflow run → **rnaseq/cohort-24** ingested

## Key Integrations

Quilt connects with the tools you already use, so your lab works from one shared set of data.

### Capture at the source

ELNs, pipelines, and instruments write results the moment an experiment finishes, so no one has to run manual exports or copy-paste.

### Package & version

Quilt bundles the data with metadata into an immutable, hash-versioned package. The sync runs both ways, so changes stay current on each side.

### Activate for teams & AI

Scientists and AI agents query governed, versioned packages from one catalog, and the data stays inside your AWS account.

![Benchling](https://www.quilt.bio/hubfs/Benchling.png)

### Benchling

Bi-directional sync with Benchling notebooks and experiment data

[ Learn More ](https://www.quilt.bio/benchling?hsLang=en)

 ELN

![nextflow](https://www.quilt.bio/hubfs/nextflow.png)

### Nextflow

Link your Nextflow Pipelines to Quilt Packages to store versioned data

[ Learn More ](https://github.com/quiltdata/nf-quilt)

 Workflow

![Ganymede_logo-06](https://www.quilt.bio/hubfs/Ganymede_logo-06.png)

### Ganymede

Automate real-time lab data capture and store it as versioned Quilt Packages

[ Learn More ](https://www.ganymede.bio)

 LIMS

Measured impact

## Outcomes teams see with Quilt

90%

faster data lookup

Resilience

3×

NGS analysis throughput

Tessera

Weeks → minutes

from instrument to AI-ready package

30+

biotech & pharma teams

incl. Allen Institute, Inari

Trusted by life-sciences organizations

- Allen Institute
- Inari
- Flagship Pioneering
- Cellarity
- Resilience
- Tessera

> Data lookups that used to take our scientists days now take minutes, with a single, governed source of truth the whole team can trust.

90% faster data lookup Data Platform team, Resilience

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