Integrations

Connect Your Lab Ecosystem with Quilt

Data flows from instruments to insights

Quilt works with your existing lab infrastructure to automatically ingest data from instruments and keep it in sync across systems, so your data no longer sits in separate silos.

Benchling Packager

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lab ecosystem ↔ Quilt synced

BenchlingELN

NextflowWorkflow

GanymedeInstruments

Quilt package

versioned · governed

10:24 Benchling entry → experiments/elisa-0412 +1 rev

10:21 Nextflow run → rnaseq/cohort-24 ingested

Key Integrations

Quilt connects with the tools you already use, so your lab works from one shared set of data.

Capture at the source

ELNs, pipelines, and instruments write results the moment an experiment finishes, so no one has to run manual exports or copy-paste.

Package & version

Quilt bundles the data with metadata into an immutable, hash-versioned package. The sync runs both ways, so changes stay current on each side.

Activate for teams & AI

Scientists and AI agents query governed, versioned packages from one catalog, and the data stays inside your AWS account.

Benchling

Bi-directional sync with Benchling notebooks and experiment data

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ELN

Nextflow

Link your Nextflow Pipelines to Quilt Packages to store versioned data

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Workflow

Ganymede

Automate real-time lab data capture and store it as versioned Quilt Packages

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LIMS

90%

faster data lookup

Resilience

3×

NGS analysis throughput

Tessera

Weeks → minutes

from instrument to AI-ready package

30+

biotech & pharma teams

incl. Allen Institute, Inari

Trusted by life-sciences organizations

Allen Institute
Inari
Flagship Pioneering
Cellarity
Resilience
Tessera

Data lookups that used to take our scientists days now take minutes, with a single, governed source of truth the whole team can trust.

90% faster data lookup Data Platform team, Resilience